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James Chambers

Biological/Organic Chemistry
Studies of Native Proteins Using Covalent Tagging, Observation, and Perturbation

Assistant Professor of Chemistry
1997 B.S. SUNY Buffalo, 2002 Ph.D. Purdue University,
2002-2004 Postdoc/NIH Postdoctoral Fellowship, UC San Francisco
2004-2007 Postdoc/NIH Postdoctoral Fellowship, UC Berkeley

602 LGRT


Principal Research Interests

Applying novel chemical biology tools and emerging biophysical techniques to solve fundemental questions in neuroscience is the focus of my research. This includes receptor trafficking and ligand-gating, remote control of neuronal activity with chemicals and light, and computer modeling of ligand recognition by biological receptors.

Real-Time Protein Tracking: One of the main problems confronting neuroscience is a lack of understanding of the daily lives of membrane receptors. To study protein localization and dynamics, it is common to label a protein with a fluorescent tag or other contrast agent and track their motion with optical microscopy. The main strategies used for labeling are overexpression of a fusion protein and antibody-based labeling. These two methods, however, may lead to confounds based on disruption of native subunit composition or alteration of the activity of the target, respectively. Our receptor tagging method utilizes low molecular weight nanoprobes that can be remotely deployed to target specific receptors. The initial target for this project will be the subtype of the glutamate receptor called the AMPA receptor.

Using Light and Chemistry to Affect Cellular Function: Various strategies have been devised for imparting light-sensitivity onto normally light-insensitive cells to remotely control their excitability. Coupling specifically substituted photochromic molecules with endogenous proteins has been successfully used to affect the activity of living cells. Light can be used to reversibly isomerize the attached photochromic molecule causing activation or inactivation of single cells or at specific locations on a cell, such as dendritic branches or even individual spines. In addition to using this current method, we will expand the toolbox for cell control using light. Novel chemical tools that allow control of neuronal function using only chemicals and light will be a research area of tremendous wealth in the next decade.

Exploration of Small Molecule Binding Sites: The family of G-Protein-coupled receptors represents a large target for disease treatment as well as for a basic understanding of neuroscience. By using computational chemistry methods we plan to investigate further both the ligand binding sites and, more interestingly, activation mechanisms of members of the amine-binding GPCR family. We also have an interest in using this model in conjunction with library virtual screening to de-orphan orphan receptors.